Bioinformatics Tools

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====== Rational Design of Peptide Vaccines ======


[[http://sysbio.unl.edu/SVMTriP/prediction.php | SVMTrip:]]  A Method to Predict Antigenic Epitopes Using Support Vector Machine to Integrate Tri-Peptide Similarity and Propensity

[[http://www.cbs.dtu.dk/services/NetMHCpan/ |NetMHCpan]] Prediction of peptide-MHC class I binding using artificial neural networks (ANNs).


[[http://imed.med.ucm.es/Tools/rankpep.html | Rankpep:]] prediction of binding peptides to Class I and Class II MHC molecules

===== Antigen Prediction =====


[[https://www.genscript.com/antigen-design.html |GenScript's OptimumAntigen™]] Design Program are optimized using the industry's most advanced antigen design algorithm. 

[[https://www.genscript.com/peptide_screening_tools.html | Peptide Library design tools]]. Overlapping peptide library can be used in epitope mapping.
====== Databases (MHC, HLA )======

http://www.ebi.ac.uk/ipd/imgt/hla/

https://gwas.biosciencedbc.jp/cgi-bin/hladb/hla_top.cgi

http://www.allelefrequencies.net

https://www.ncbi.nlm.nih.gov/gv/mhc/

http://www.ebi.ac.uk/ipd/imgt/hla/allele.html

https://www.ebi.ac.uk/ipd/mhc/

http://hla.alleles.org/nomenclature/index.html

Bioinformatics Tools

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