[[http://www.bio.davidson.edu/projects/magic/magic.html | MAGIC Tool:]] MicroArray Genome Imaging & Clustering Tool

[[http://www.mathworks.com/matlabcentral/fileexchange/loadFile.do?objectId=2573 | MATLAB]] Central File Exchange - DNA MicroArray Image Processing Case Study

[[http://bonsai.ims.u-tokyo.ac.jp/~mdehoon/software/cluster/software.htm | Cluster 3.0:]] The open source clustering software available here implement the most commonly used clustering methods for gene expression data analysis.

[[http://search.cpan.org/dist/Microarray-GeneXplorer/ | Microarray-GeneXplorer-0.11:]]

[[http://www-stat.stanford.edu/~tibs/PAM/ | PAM:]] Prediction Analysis for Microarrays

[[http://genome-www5.stanford.edu/resources/restech.shtml | Microarray Software List]]

[[http://www.mged.org/Workgroups/MIAME/miame.html | MIAME:]] Minimum Information About a Microarray Experiment that is needed to enable the interpretation of the results of the experiment unambiguously and potentially to reproduce the experiment