[[http://capri.ebi.ac.uk/ | CAPRI:]] Critical Assessment of PRediction of Interactions

[[http://autodock.scripps.edu/ | AutoDock]] is the most cited docking software — AutoDock

[[http://hex.loria.fr/ | Hex]] Protein Docking:docking, protein docking, hex docking

[[http://zlab.bu.edu/zdock/dockingsites.shtml | ZDOCK:]] Protein Docking protein-protein docking

[[http://graylab.jhu.edu/docking/rosetta/| Rosetta]] Docking Software

[[http://gold.ccdc.cam.ac.uk/setup_and_run_docking.php | GOLD Docking:]] GOLD Interactive Web Trial - Run real-time GOLD dockings and visualise the results.
GOLD Interactive Web Tri
[[http://www.bmm.icnet.uk/docking/download.html |  3D-Dock Suite]]

[[http://www.bmm.icnet.uk/docking/ | 3D-Dock Suite]]

[[http://www.planaria-software.com/arguslab40.htm | ArgusDock:]] the new drug docking code. Contains both the GADock and ArgusDock docking engines and the AScore scoring function with a preliminary set of parameters.

[[http://www.biosolveit.de/ | FlexX:]] BioSolveIT


===== Protein-DNA =====


[[http://www.nmr.chem.uu.nl/haddock/ | HANDDOCK:]] High Ambiguity Driven biomolecular DOCKing

[[http://users.unimi.it/%7Eddl/escherng/index.htm | ESCHER:]] Protein-protein and DNA-protein docking capability.

[[http://dock.compbio.ucsf.edu/ | DOCK 6.2]]

====== protein docking web server ======


[[http://vakser.bioinformatics.ku.edu/resources/gramm/grammx/ | grammX]]

[[http://www.csd.abdn.ac.uk/hex_server/ | Hex Server]]

[[http://nrc.bu.edu/cluster/ | ClusPro]]

[[http://dockvision.com/overview/overview.html | Dockvision]]

===== List =====


[[http://mgl.scripps.edu/people/gmm/ | docking web list]]

[[http://www.fli-leibniz.de/jcb/ppi/ | software list]]