Bioinformatics Tools

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====== Primer Design ====== **[[http://www.idtdna.com/pages/scitools | IDT SciTools:]] Web Tools [[http://dharmacon.gelifesciences.com/webtools/reviewer/ | GE Primer design]] [[http://www.ncbi.nlm.nih.gov/tools/primer-blast/ | Primer Design:]] NCBI tools [[http://molbiol-tools.ca/PCR.htm | DESIGN PCR PRIMERS]] [[http://www.biophp.org/minitools/melting_temperature/demo.php | melting temperature calculator for primers]] [[http://www.bioinformatics.org/sms/rev_comp.html | primer convert]] to REVERSE or REVERSE COMPLEMENT [[http://rna.lundberg.gu.se/cutter2/ | Webcutter 2.0]] restriction mapping [[http://www.restrictionmapper.org/ | RestrictionMapper version 3:]] Restriction mapping of DNA sequences. Can also perform a virtual digest. ====== Calculator ====== [[http://dharmacon.gelifesciences.com/webtools/reviewer/ | GE Calculator:]] Molar conversions - moles ↔ weight, Concentration conversions - molar units ↔ weight / volume, Spectrophotometric conversions - Molar conversions - optical units ↔ concentration [[http://www.sciencegateway.org/tools/proteinmw.htm | molecular weight calculator]] [[http://www.convertworld.com/es/ | Unit Conversion]] [[http://www.unitconversion.org/ | Unit Conversion]] [[http://www.changbioscience.com/calculator/recipe.html | Recipe calculator]] [[http://www.idtdna.com/Calc/resuspension/ | Resuspension Calculator (IDT)]]:The Resuspension Calculator assists in determining the volume needed to resuspend a dry, lyophilized oligo (primers) to a desired concentration [[http://www.restrictionmapper.org/dilutioncalc9.html |Dilution Calculator]] [[http://insilico.ehu.es/mini_tools/rcf_rpm.php | Convert RPM to RCG]] (Relative Centrifugal Force o g-factor) [[http://molbiol.edu.ru/eng/scripts/h01_04.html | Conversion: weight - moles (for proteins)]] [[http://www.digitaldutch.com/unitconverter/area.htm | Unit Converter]] [[http://molbiol.edu.ru/eng/scripts/01_04.html |**Conversion:]] weight - moles (for proteins CONCENTRATION). ====== Protocols ====== [[http://www.changbioscience.com/protocols/recipe.htm | Recipe protocols]] [[http://www.protocol-online.org/ | protocol-Online]] [[http://openwetware.org/wiki/Protocols | Protocols]] ====== information ====== [[http://openwetware.org/wiki/E._coli_genotypes | E.coli genotypes]] ====== Softwares ====== [[http://serialbasics.free.fr/Serial_Cloner.html | Serial cloner:]] [[http://www.clcbio.com/products/clc-main-workbench/ | CLC-main-workbench:]] The functionalities of CLC Main Workbench are used by tens of thousands of researchers all over the world for DNA, RNA, and protein sequence data analysis, such as gene expression analysis, primer design, molecular cloning, phylogenetic analyses, and sequence data management, amongst a wide variety of other features – all wrapped in an intuitive graphical user-interface.