TargetP: predicts the subcellular location of eukaryotic proteins

SLocX: Subcellular Localization using gene eXpression

SignalP 4.1: server predicts the presence and location of signal peptide cleavage sites in amino acid sequences from different organisms

MultiLoc2: integrating phylogeny and Gene Ontology terms improves subcellular protein localization prediction

list of server for Subcellular Localization Prediction Tools

PSORT: Protein Subcellular Localization Prediction Tool

WoLF PSORT: Advanced Protein Subcellular Localization Prediction Tool