Bioinformatics Tools

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====== Rational Design of Peptide Vaccines ====== [[http://sysbio.unl.edu/SVMTriP/prediction.php | SVMTrip:]] A Method to Predict Antigenic Epitopes Using Support Vector Machine to Integrate Tri-Peptide Similarity and Propensity [[http://www.cbs.dtu.dk/services/NetMHCpan/ |NetMHCpan]] Prediction of peptide-MHC class I binding using artificial neural networks (ANNs). [[http://imed.med.ucm.es/Tools/rankpep.html | Rankpep:]] prediction of binding peptides to Class I and Class II MHC molecules ===== Antigen Prediction ===== [[https://www.genscript.com/antigen-design.html |GenScript's OptimumAntigen™]] Design Program are optimized using the industry's most advanced antigen design algorithm. ====== Databases (MHC, HLA )====== http://www.ebi.ac.uk/ipd/imgt/hla/ https://gwas.biosciencedbc.jp/cgi-bin/hladb/hla_top.cgi http://www.allelefrequencies.net https://www.ncbi.nlm.nih.gov/gv/mhc/ http://www.ebi.ac.uk/ipd/imgt/hla/allele.html https://www.ebi.ac.uk/ipd/mhc/ http://hla.alleles.org/nomenclature/index.html